3HV8 Hydrolase date Jun 15, 2009
title Crystal Structure Of Fimx Eal Domain From Pseudomonas Aerugi To C-Di-Gmp
authors M.V.A.S.Navarro, N.De, N.Bae, H.Sondermann
compound source
Molecule: Protein Fimx
Chain: A
Fragment: Eal Domain: Unp Residues 429-691
Ec: 3.1.4.52
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1 1c Prs 101 Lmg 12228
Atcc: 15692
Gene: Fimx, Pa4959
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppsumo
symmetry Space Group: P 41 21 2
R_factor 0.192 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.950 93.950 68.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand C2E enzyme Hydrolase E.C.3.1.4.52 BRENDA
Primary referenceStructural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX., Navarro MV, De N, Bae N, Wang Q, Sondermann H, Structure. 2009 Aug 12;17(8):1104-16. PMID:19679088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3hv8.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3HV8
  • CSU: Contacts of Structural Units for 3HV8
  • Structure Factors (333 Kb)
  • Retrieve 3HV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HV8 from S2C, [Save to disk]
  • Re-refined 3hv8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HV8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HV8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hv8] [3hv8_A]
  • SWISS-PROT database: [Q9HUK6]
  • Domain organization of [Q9HUK6_PSEAE] by SWISSPFAM
  • Domain found in 3HV8: [EAL ] by SMART
  • Other resources with information on 3HV8
  • Community annotation for 3HV8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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