OCA Atlas for 3I08

3I08

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CL

enzyme

note

3I08 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A, C
D, B

Primary reference

Effects of S1 cleavage on the structure, surface export, and signaling activity of human Notch1 and Notch2., Gordon WR, Vardar-Ulu D, L'Heureux S, Ashworth T, Malecki MJ, Sanchez-Irizarry C, McArthur DG, Histen G, Mitchell JL, Aster JC, Blacklow SC, PLoS One. 2009 Aug 24;4(8):e6613. PMID:19701457

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]

Biological Unit Coordinates (3i08.pdb1.gz) 38 Kb

Biological Unit Coordinates (3i08.pdb2.gz) 38 Kb

Biological Unit Coordinates (3i08.pdb3.gz) 73 Kb

LPC: Ligand-Protein Contacts for 3I08

CSU: Contacts of Structural Units for 3I08

Structure Factors (163 Kb)

Retrieve 3I08 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3I08 from S2C, [Save to disk]

Re-refined 3i08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I08 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i08] [3i08_A] [3i08_B] [3i08_C] [3i08_D]

SWISS-PROT database: [P46531]

Belongs to the selenoprotein p receptor (selp-receptor) family

according to TCDB.

Domains found in 3I08: [NL] [NOD] [NODP ] by SMART

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