3I5T Transferase date Jul 06, 2009
title Crystal Structure Of Aminotransferase Prk07036 From Rhodobac Sphaeroides Kd131
authors Y.Patskovsky, R.Toro, J.Freeman, J.Do, J.M.Sauder, S.K.Burley, S.C York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Aminotransferase
Chain: A, B
Ec: 2.6.1.-
Engineered: Yes
Organism_scientific: Rhodobacter Sphaeroides 2.4.1
Organism_taxid: 272943
Gene: Rhos4_35670, Rsp_3534
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.181 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.129 63.280 69.752 103.79 100.76 107.08
method X-Ray Diffractionresolution 2.00 Å
ligand PLP enzyme Transferase E.C.2.6.1 BRENDA
Gene RHOS4 ; RSP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3i5t.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3I5T
  • CSU: Contacts of Structural Units for 3I5T
  • Likely Quarternary Molecular Structure file(s) for 3I5T
  • Structure Factors (1084 Kb)
  • Retrieve 3I5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I5T from S2C, [Save to disk]
  • Re-refined 3i5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I5T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I5T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i5t_B] [3i5t] [3i5t_A]
  • SWISS-PROT database: [Q3IWE9]
  • Domain organization of [Q3IWE9_RHOS4] by SWISSPFAM
  • Other resources with information on 3I5T
  • Community annotation for 3I5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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