3I6E Isomerase date Jul 07, 2009
title Crystal Structure Of Muconate Lactonizing Enzyme From Rueger Pomeroyi.
authors A.A.Fedorov, E.V.Fedorov, J.M.Sauder, S.K.Burley, J.A.Gerlt, S.C. York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Muconate Cycloisomerase I
Chain: A, B, C, D, E, F, G, H
Synonym: Muconate Lactonizing Enzyme
Ec: 5.5.1.1
Engineered: Yes
 Organism_scientific: Ruegeria Pomeroyi
Organism_taxid: 89184
Gene: Catb, Spo3667
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.135 135.358 113.024 90.00 103.18 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG, NA enzyme Isomerase E.C.5.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (3i6e.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (3i6e.pdb2.gz) 116 Kb
  • Biological Unit Coordinates (3i6e.pdb3.gz) 117 Kb
  • Biological Unit Coordinates (3i6e.pdb4.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3I6E
  • CSU: Contacts of Structural Units for 3I6E
  • Likely Quarternary Molecular Structure file(s) for 3I6E
  • Structure Factors (2622 Kb)
  • Retrieve 3I6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I6E from S2C, [Save to disk]
  • Re-refined 3i6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3I6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3I6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I6E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i6e_H] [3i6e_C] [3i6e_F] [3i6e_D] [3i6e_B] [3i6e_A] [3i6e] [3i6e_G] [3i6e_E]
  • SWISS-PROT database: [Q5LM96]
  • Domain organization of [Q5LM96_SILPO] by SWISSPFAM
  • Domain found in 3I6E: [MR_MLE ] by SMART
    • Other resources with information on 3I6E
  • Community annotation for 3I6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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