3J2Z Immune System date Jan 28, 2013
title Electron Cryo-Microscopy Of Chikungunya Vlp In Complex With Neutralizing Antibody Fab M10
authors S.Sun, Y.Xiang, M.G.Rossmann
compound source
Molecule: M10 Light Chain
Chain: A, C, E, G
Fragment: Fab
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: M10 Heavy Chain
Chain: B, D, F, H
Fragment: Fab
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 16.90 Å
Primary referenceStructural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization., Sun S, Xiang Y, Akahata W, Holdaway H, Pal P, Zhang X, Diamond MS, Nabel GJ, Rossmann MG, Elife. 2013;2:e00435. doi: 10.7554/eLife.00435. Epub 2013 Apr 2. PMID:23577234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (3j2z.pdb1.gz) 15689 Kb
  • CSU: Contacts of Structural Units for 3J2Z
  • Retrieve 3J2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J2Z from S2C, [Save to disk]
    • View 3J2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J2Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J2Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j2z_F] [3j2z_B] [3j2z_A] [3j2z_H] [3j2z_E] [3j2z] [3j2z_D] [3j2z_G] [3j2z_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J2Z: [IG_like] [IGv ] by SMART
    • Other resources with information on 3J2Z
  • Community annotation for 3J2Z at PDBWiki (http://pdbwiki.org)

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