3J5V Viral Protein date Nov 20, 2013
title Phuz201 Filament
authors E.A.Zehr
compound source
Molecule: Phuz201 Subunit
Chain: a
Engineered: Yes
 Organism_scientific: Pseudomonas Phage 201phi2-1
Organism_taxid: 198110
Gene: 201phi2-1p059
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.10 Å
ligand GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
a


Primary referenceThe Structure and Assembly Mechanism of a Novel Three-Stranded Tubulin Filament that Centers Phage DNA., Zehr EA, Kraemer JA, Erb ML, Coker JK, Montabana EA, Pogliano J, Agard DA, Structure. 2014 Mar 11. pii: S0969-2126(14)00046-X. doi:, 10.1016/j.str.2014.02.006. PMID:24631461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3j5v.pdb1.gz) 457 Kb
  • LPC: Ligand-Protein Contacts for 3J5V
  • CSU: Contacts of Structural Units for 3J5V
  • Retrieve 3J5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J5V from S2C, [Save to disk]
    • View 3J5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J5V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j5v_a] [3j5v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J5V
  • Community annotation for 3J5V at PDBWiki (http://pdbwiki.org)

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