3JD3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GTP, NAI enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, C, E, A, D, F


Primary referenceUsing Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase., Borgnia MJ, Banerjee S, Merk A, Matthies D, Bartesaghi A, Rao P, Pierson J, Earl LA, Falconieri V, Subramaniam S, Milne JL, Mol Pharmacol. 2016 Jun;89(6):645-51. doi: 10.1124/mol.116.103382. Epub 2016 Apr , 1. PMID:27036132
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (3jd3.pdb1.gz) 452 Kb
  • LPC: Ligand-Protein Contacts for 3JD3
  • CSU: Contacts of Structural Units for 3JD3
  • Retrieve 3JD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JD3 from S2C, [Save to disk]
    • View 3JD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jd3] [3jd3_A] [3jd3_B] [3jd3_C] [3jd3_D] [3jd3_E] [3jd3_F]
  • SWISS-PROT database:
  • Domain found in 3JD3: [ELFV_dehydrog ] by SMART

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