3JSM	Transferase Dna Complex	date	Sep 10, 2009
title	K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To Ds-D Complexed With Tenofovir-Diphosphate As The Incoming Nucleo Substrate
authors	K.Das, E.Arnold
compound		source
Molecule: Dna (5'- D(Atpgpgptpcpgpgpcpgpcpcpcpgpapapcpapgp Ptpgptpg)-3'); Chain: T Engineered: Yes		Synthetic: Yes Other_details: Chemically Modified With Thiol-Dgmp And Enzy Terminated With Ddgtp;
Molecule: Dna (5'- D(Acpapgptpcpcpcptpgptptpcpgpgp(Mrg) Pcpgpcpcp(Ddg))-3'); Chain: P Engineered: Yes		Synthetic: Yes
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit Chain: A Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Bh10 Gene: Gag-Pol, Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha
Molecule: Hiv-1 Reverse Transcriptase P51 Subunit Chain: B Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Bh10 Gene: Gag-Pol, Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha
symmetry	Space Group: P 31 1 2	R_factor 0.252 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.310 170.310 155.440 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	DDG, MG, MRG, SO4, TNV	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for the role of the K65r mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance., Das K, Bandwar RP, White KL, Feng JY, Sarafianos SG, Tuske S, Tu X, Clark AD Jr, Boyer PL, Hou X, Gaffney BL, Jones RA, Miller MD, Hughes SH, Arnold E, J Biol Chem. 2009 Dec 11;284(50):35092-100. Epub 2009 Oct 7. PMID:19812032

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (3jsm.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 3JSM CSU: Contacts of Structural Units for 3JSM Structure Factors (442 Kb) Retrieve 3JSM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JSM from S2C, [Save to disk] Re-refined 3jsm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JSM in 3D

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Visual 3D analysis of 3JSM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JSM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jsm_P] [3jsm_T] [3jsm] [3jsm_A] [3jsm_B] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM

Other resources with information on 3JSM

Community annotation for 3JSM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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