OCA Atlas for 3JTY

3JTY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

LDA

enzyme

Genes

PFL, PFL

Gene
Ontology

Chain	Function	Process	Component
C, A, B, D

Primary reference

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution., Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK, Proteins. 2010 Nov 1;78(14):3056-62. PMID:20737437

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]

Biological Unit Coordinates (3jty.pdb1.gz) 61 Kb

Biological Unit Coordinates (3jty.pdb2.gz) 60 Kb

Biological Unit Coordinates (3jty.pdb3.gz) 61 Kb

Biological Unit Coordinates (3jty.pdb4.gz) 61 Kb

LPC: Ligand-Protein Contacts for 3JTY

CSU: Contacts of Structural Units for 3JTY

Structure Factors (1012 Kb)

Retrieve 3JTY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3JTY from S2C, [Save to disk]

Re-refined 3jty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JTY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jty] [3jty_A] [3jty_B] [3jty_C] [3jty_D]

SWISS-PROT database: [Q4KH25]

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