3KBH Hydrolase date Oct 20, 2009
title Crystal Structure Of Nl63 Respiratory Coronavirus Receptor-B Domain Complexed With Its Human Receptor
authors K.Wu, W.Li, G.Peng, F.Li
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A, B, C, D
Fragment: Residues 19-615
Synonym: Ace-Related Carboxypeptidase, Angiotensin-Converti Homolog, Aceh, Metalloprotease Mprot15, Processed Angiotens Converting Enzyme 2;
Ec: 3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Spike Protein, Unq868pro1885
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9 Insect Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfactbac I

Molecule: Spike Glycoprotein
Chain: E, F, G, H
Fragment: Residues 481-616
Synonym: S Glycoprotein, Peplomer Protein, E2
Engineered: Yes

Organism_scientific: Human Coronavirus Nl63
Organism_taxid: 277944
Gene: 2, Human Angiotensin-Converting Enzyme 2, S
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9 Insect Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfactbac I
symmetry Space Group: P 43
R_factor 0.268 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.764 77.764 631.095 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.31 Å
ligand NAG enzyme Hydrolase E.C.3.4.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceCrystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor., Wu K, Li W, Peng G, Li F, Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19970-4. Epub 2009 Nov 9. PMID:19901337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (450 Kb) [Save to disk]
  • Biological Unit Coordinates (3kbh.pdb1.gz) 223 Kb
  • Biological Unit Coordinates (3kbh.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 3KBH
  • CSU: Contacts of Structural Units for 3KBH
  • Structure Factors (628 Kb)
  • Retrieve 3KBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KBH from S2C, [Save to disk]
  • Re-refined 3kbh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KBH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KBH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kbh_C] [3kbh] [3kbh_B] [3kbh_F] [3kbh_H] [3kbh_D] [3kbh_E] [3kbh_A] [3kbh_G]
  • SWISS-PROT database: [Q9BYF1] [Q6Q1S2]
  • Domain organization of [ACE2_HUMAN] [SPIKE_CVHNL] by SWISSPFAM
  • Other resources with information on 3KBH
  • Community annotation for 3KBH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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