3KDJ	Hydrolase Hormone Receptor	date	Oct 23, 2009
title	Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
authors	P.Yin, H.Fan, Q.Hao, X.Yuan, N.Yan
compound		source
Molecule: Putative Uncharacterized Protein At5g46790 Chain: A Fragment: Residues 20-221 Synonym: Pyl1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: At5g46790 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
Molecule: Protein Phosphatase 2c 56 Chain: B Fragment: Residues 119-434 Synonym: Abi1, Atpp2c56, Protein Phosphatase 2c Abi1, Pp2c Protein Abscisic Acid-Insensitive 1; Ec: 3.1.3.16 Engineered: Yes Mutation: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Abi1, At4g26080, F20b18.190 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 21 21 21	R_factor 0.209 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.610 86.788 110.701 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.88 Å
ligand	A8S, MN	enzyme	Hydrolase E.C.3.1.3.16 BRENDA
Gene Ontology	Chain Function Process Component A protein phosphatase inhibito... B
Primary reference	Structural insights into the mechanism of abscisic acid signaling by PYL proteins., Yin P, Fan H, Hao Q, Yuan X, Wu D, Pang Y, Yan C, Li W, Wang J, Yan N, Nat Struct Mol Biol. 2009 Dec;16(12):1230-6. Epub 2009 Nov 5. PMID:19893533

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (3kdj.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 3KDJ CSU: Contacts of Structural Units for 3KDJ Structure Factors (766 Kb) Retrieve 3KDJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KDJ from S2C, [Save to disk] Re-refined 3kdj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KDJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KDJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KDJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kdj_B] [3kdj_A] [3kdj] SWISS-PROT database: [P49597] [Q8VZS8] Domain organization of [P2C56_ARATH] [PYL1_ARATH] by SWISSPFAM Domains found in 3KDJ: [PP2C_SIG] [PP2Cc ] by SMART

Other resources with information on 3KDJ

Community annotation for 3KDJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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