OCA Atlas for 3KML

3KML

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, Q, A, O, M, G, D, C, H, K, I, F, E, P, J, N, L

Primary reference

Nanoscale protein assemblies from a circular permutant of the tobacco mosaic virus., Dedeo MT, Duderstadt KE, Berger JM, Francis MB, Nano Lett. 2010 Jan;10(1):181-6. PMID:19924865

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]

Biological Unit Coordinates (3kml.pdb1.gz) 738 Kb

CSU: Contacts of Structural Units for 3KML

Structure Factors (808 Kb)

Retrieve 3KML in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KML from S2C, [Save to disk]

Re-refined 3kml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KML in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kml] [3kml_A] [3kml_B] [3kml_C] [3kml_D] [3kml_E] [3kml_F] [3kml_G] [3kml_H] [3kml_I] [3kml_J] [3kml_K] [3kml_L] [3kml_M] [3kml_N] [3kml_O] [3kml_P] [3kml_Q]

SWISS-PROT database:

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