3KYD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, VMX, ZN	enzyme
Gene Ontology	Chain Function Process Component A ubiquitin activating enzyme ... enzyme activator activity B D
Primary reference	Active site remodelling accompanies thioester bond formation in the SUMO E1., Olsen SK, Capili AD, Lu X, Tan DS, Lima CD, Nature. 2010 Feb 18;463(7283):906-12. PMID:20164921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (3kyd.pdb1.gz) 135 Kb LPC: Ligand-Protein Contacts for 3KYD CSU: Contacts of Structural Units for 3KYD Structure Factors (461 Kb) Retrieve 3KYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KYD from S2C, [Save to disk] Re-refined 3kyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kyd] [3kyd_A] [3kyd_B] [3kyd_D] SWISS-PROT database: Domain found in 3KYD: [UBQ ] by SMART

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