OCA Atlas for 3LIM

3LIM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

LDA

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, F, A, D, E	channel activity toxin activity

Primary reference

Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins., Mechaly AE, Bellomio A, Gil-Carton D, Morante K, Valle M, Gonzalez-Manas JM, Guerin DM, Structure. 2011 Feb 9;19(2):181-91. PMID:21300287

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]

Biological Unit Coordinates (3lim.pdb1.gz) 36 Kb

Biological Unit Coordinates (3lim.pdb2.gz) 36 Kb

Biological Unit Coordinates (3lim.pdb3.gz) 36 Kb

Biological Unit Coordinates (3lim.pdb4.gz) 35 Kb

Biological Unit Coordinates (3lim.pdb5.gz) 34 Kb

Biological Unit Coordinates (3lim.pdb6.gz) 35 Kb

LPC: Ligand-Protein Contacts for 3LIM

CSU: Contacts of Structural Units for 3LIM

Structure Factors (1011 Kb)

Retrieve 3LIM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3LIM from S2C, [Save to disk]

Re-refined 3lim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LIM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lim] [3lim_A] [3lim_B] [3lim_C] [3lim_D] [3lim_E] [3lim_F]

SWISS-PROT database:

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