3LN1 Oxidoreductase date Feb 01, 2010
title Structure Of Celecoxib Bound At The Cox-2 Active Site
authors J.R.Kiefer, R.G.Kurumbail, W.C.Stallings, J.L.Pawlitz
compound source
Molecule: Prostaglandin Gh Synthase 2
Chain: A, B, C, D
Synonym: Cyclooxygenase-2, Cox-2, Prostaglandin-Endoperoxid 2, Prostaglandin H2 Synthase 2, Pgh Synthase 2, Pghs-2, Phs Glucocorticoid-Regulated Inflammatory Cyclooxygenase, Gripg Protein, Macrophage Activation-Associated Marker Protein P7 2;
Ec: 1.14.99.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cox-2, Cox2, Pghs-B, Prostaglandin H2 Synthase 2, Ptg Tis10;
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.232 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.942 135.377 124.079 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BOG, CEL, HEM, NAG BindingDB enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • peroxidase activity


  • Primary referenceThe novel benzopyran class of selective cyclooxygenase-2 inhibitors. Part 2: The second clinical candidate having a shorter and favorable human half-life., Wang JL, Limburg D, Graneto MJ, Springer J, Hamper JR, Liao S, Pawlitz JL, Kurumbail RG, Maziasz T, Talley JJ, Kiefer JR, Carter J, Bioorg Med Chem Lett. 2010 Jul 24. PMID:20709553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • Biological Unit Coordinates (3ln1.pdb1.gz) 184 Kb
  • Biological Unit Coordinates (3ln1.pdb2.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 3LN1
  • CSU: Contacts of Structural Units for 3LN1
  • Structure Factors (1653 Kb)
  • Retrieve 3LN1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LN1 from S2C, [Save to disk]
  • Re-refined 3ln1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LN1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LN1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LN1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ln1_C] [3ln1] [3ln1_D] [3ln1_B] [3ln1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LN1: [EGF ] by SMART
  • Other resources with information on 3LN1
  • Community annotation for 3LN1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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