3LP3	Viral Protein	date	Feb 04, 2010
title	P15 Hiv Rnaseh Domain With Inhibitor Mk3
authors	Y.Yan, S.K.Munshi, G.S.Prasad, H.P.Su
compound		source
Molecule: P15 Chain: A, B Fragment: Residues 1014-1149 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11676 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 31	R_factor 0.229 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.256 51.256 112.773 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	LP9, MN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the inhibition of RNaseH activity of HIV-1 Reverse Transcriptase by RNaseH active site-directed inhibitors., Su HP, Yan Y, Prasad GS, Smith RF, Daniels CL, Abeywickrema PD, Reid JC, Loughran HM, Kornienko M, Sharma S, Grobler JA, Xu B, Sardana V, Allison TJ, Williams PD, Darke PL, Hazuda DJ, Munshi S, J Virol. 2010 May 19. PMID:20484498

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3lp3.pdb1.gz) 22 Kb Biological Unit Coordinates (3lp3.pdb2.gz) 22 Kb Biological Unit Coordinates (3lp3.pdb3.gz) 43 Kb LPC: Ligand-Protein Contacts for 3LP3 CSU: Contacts of Structural Units for 3LP3 Structure Factors (121 Kb) Retrieve 3LP3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LP3 from S2C, [Save to disk] Re-refined 3lp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LP3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LP3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LP3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lp3_B] [3lp3] [3lp3_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3LP3

Community annotation for 3LP3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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