3MHV Protein Transport date Apr 09, 2010
title Crystal Structure Of Vps4 And Vta1
authors D.Yang, J.H.Hurley
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 4
Chain: C
Fragment: Residues 297-413
Synonym: Vps4, Protein End13, Doa4-Independent Degradation Vacuolar Protein-Targeting Protein 10;
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Vps4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rossetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst2

Molecule: Vacuolar Protein Sorting-Associated Protein Vta1
Chain: A
Fragment: Residues 289-330
Synonym: Vps20-Associated Protein 1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Vta1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rossetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst2
symmetry Space Group: P 2 2 21
R_factor 0.298 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.979 70.322 88.839 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
note 3MHV is a representative structure
Primary referenceStructural role of the Vps4-Vta1 interface in ESCRT-III recycling., Yang D, Hurley JH, Structure. 2010 Aug 11;18(8):976-84. PMID:20696398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3mhv.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 3MHV
  • Structure Factors (33 Kb)
  • Retrieve 3MHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MHV from S2C, [Save to disk]
  • Re-refined 3mhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MHV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MHV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mhv_C] [3mhv_A] [3mhv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MHV
  • Community annotation for 3MHV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science