3NJH Hydrolase date Jun 17, 2010
title D37a Mutant Of So1698 Protein, An Aspartic Peptidase From Sh Oneidensis.
authors J.Osipiuk, R.Mulligan, M.Bargassa, F.Collart, A.Joachimiak, Midwe For Structural Genomics (Mcsg)
compound source
Molecule: Peptidase
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
 Organism_scientific: Shewanella Oneidensis
Organism_taxid: 70863
Strain: Mr-1
Gene: So_1698
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 3
R_factor 0.127 R_Free 0.152
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.986 97.986 65.844 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.94 Å
ligand CA, GOL, NA enzyme
Gene SO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCharacterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase., Osipiuk J, Mulligan R, Bargassa M, Hamilton JE, Cunningham MA, Joachimiak A, J Biol Chem. 2012 Jun 1;287(23):19452-61. Epub 2012 Apr 5. PMID:22493430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3njh.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3njh.pdb2.gz) 119 Kb
  • Biological Unit Coordinates (3njh.pdb3.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3NJH
  • CSU: Contacts of Structural Units for 3NJH
  • Structure Factors (1045 Kb)
  • Retrieve 3NJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NJH from S2C, [Save to disk]
  • Re-refined 3njh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NJH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3njh_C] [3njh_A] [3njh_D] [3njh_B] [3njh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NJH
  • Community annotation for 3NJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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