3O1T	Oxidoreductase	date	Jul 22, 2010
title	Iron-Catalyzed Oxidation Intermediates Captured In A Dna Rep Dioxygenase
authors	C.Yi, G.Jia, G.Hou, Q.Dai, W.Zhang, G.Zheng, X.Jian, C.G.Yang, Q.Cu
compound		source
Molecule: Alpha-Ketoglutarate-Dependent Dioxygenase Alkb Chain: A Fragment: N-Terminus 11 Amino Acids Truncated Alkb (Unp Res To 216); Synonym: Alkylated Dna Repair Protein Alkb Ec: 1.14.11.- Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Gene: Alkb, Aidd, B2212, Jw2200 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: D3-157
Molecule: Dna (5'-D(Apgpgptpapap(Mdu)Papcpcpgpt Chain: B Engineered: Yes		Synthetic: Yes Other_details: Solid State Dna Synthesizer.
Molecule: Dna (5'-D(Apapcpgpgptpaptptpapcpcpt) Chain: C Engineered: Yes		Synthetic: Yes Other_details: Solid State Dna Synthesizer.
symmetry	Space Group: P 1 21 1	R_factor 0.188 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.120 75.880 51.160 90.00 107.16 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	2YR, FE, MDU, SIN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase., Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C, Nature. 2010 Nov 11;468(7321):330-3. PMID:21068844

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3o1t.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 3O1T CSU: Contacts of Structural Units for 3O1T Structure Factors (628 Kb) Retrieve 3O1T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O1T from S2C, [Save to disk] Re-refined 3o1t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3O1T

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O1T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o1t_C] [3o1t_B] [3o1t_A] [3o1t] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3O1T

Community annotation for 3O1T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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