3ODM	Lyase	date	Aug 11, 2010
title	Archaeal-Type Phosphoenolpyruvate Carboxylase
authors	P.W.Dunten
compound		source
Molecule: Phosphoenolpyruvate Carboxylase Chain: A, B, C, D, E, F, G, H Synonym: Pepcase, Pepc Ec: 4.1.1.31 Engineered: Yes		Organism_scientific: Clostridium Perfringens Organism_taxid: 1502 Gene: Cpe1094, Ppca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)(Pril) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pjlk15-19b
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.420 161.580 279.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	AUC, MLI	enzyme	Lyase E.C.4.1.1.31 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structure of an archaeal-type phosphoenolpyruvate carboxylase sensitive to inhibition by aspartate., Dharmarajan L, Kraszewski JL, Mukhopadhyay B, Dunten PW, Proteins. 2011 Feb 3. doi: 10.1002/prot.23006. PMID:21491491

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1387 Kb) [Save to disk] Biological Unit Coordinates (3odm.pdb1.gz) 688 Kb Biological Unit Coordinates (3odm.pdb2.gz) 690 Kb Biological Unit Coordinates (3odm.pdb3.gz) 346 Kb Biological Unit Coordinates (3odm.pdb4.gz) 349 Kb Biological Unit Coordinates (3odm.pdb5.gz) 349 Kb Biological Unit Coordinates (3odm.pdb6.gz) 349 Kb LPC: Ligand-Protein Contacts for 3ODM CSU: Contacts of Structural Units for 3ODM Structure Factors (2584 Kb) Retrieve 3ODM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ODM from S2C, [Save to disk] Re-refined 3odm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ODM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ODM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ODM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3odm] [3odm_H] [3odm_D] [3odm_C] [3odm_F] [3odm_B] [3odm_E] [3odm_A] [3odm_G] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ODM

Community annotation for 3ODM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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