3OE9	Signaling Protein, Hydrolase	date	Aug 12, 2010
title	Crystal Structure Of The Chemokine Cxcr4 Receptor In Complex Small Molecule Antagonist It1t In P1 Spacegroup
authors	B.Wu, C.D.Mol, G.W.Han, V.Katritch, E.Y.T.Chien, W.Liu, V.Cherezov R.C.Stevens, Accelerated Technologies Center For Gene To 3d (Atcg3d), Gpcr Network (Gpcr)
compound		source
Molecule: C-X-C Chemokine Receptor Type 4, Lysozyme Chimera Chain: A, B Fragment: Cxcr4 Residues 2-228, Lysozyme Residues 1002-1161 Residues 231-319; Synonym: Cxc-R4, Cxcr-4, Stromal Cell-Derived Factor 1 Rece Receptor, Fusin, Leukocyte-Derived Seven Transmembrane Do Receptor, Lestr, Lcr1, Fb22, Npyrl, Hm89, Lysis Protein, Mu Endolysin; Ec: 3.2.1.17 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens, Enterobacteria Phage T4 Organism_taxid: 9606, 10665 Gene: Cxcr4, Cxcr4_human,E Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Bacmid Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1	R_factor 0.252 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.497 72.739 84.273 64.66 73.93 61.31
method	X-Ray Diffraction	resolution	3.10 Å
ligand	ITD BindingDB	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene	CXCR4 (H. sapiens)
Gene Ontology	Chain Function Process Component A, B
Disease	Myelokathexis, isolated OMIM:162643 WHIM syndrome OMIM:162643
Primary reference	Structures of the CXCR4 Chemokine GPCR with Small-Molecule and Cyclic Peptide Antagonists., Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC, Science. 2010 Oct 7. PMID:20929726

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk] Biological Unit Coordinates (3oe9.pdb1.gz) 283 Kb LPC: Ligand-Protein Contacts for 3OE9 CSU: Contacts of Structural Units for 3OE9 Structure Factors (514 Kb) Retrieve 3OE9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OE9 from S2C, [Save to disk] Re-refined 3oe9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OE9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OE9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OE9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oe9_A] [3oe9] [3oe9_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OE9

Community annotation for 3OE9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---