3OTQ Hydrolase date Sep 13, 2010
title Soluble Epoxide Hydrolase In Complex With Pyrazole Antagonis
authors N.A.Farrow
compound source
Molecule: Epoxide Hydrolase 2
Chain: A
Synonym: Soluble Epoxide Hydrolase, Seh, Epoxide Hydratase, Epoxide Hydrolase, Ceh;
Ec: 3.3.2.10
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.230 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.993 92.993 243.651 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand MZL BindingDB enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstituted pyrazoles as novel sEH antagonist: investigation of key binding interactions within the catalytic domain., Lo HY, Man CC, Fleck RW, Farrow NA, Ingraham RH, Kukulka A, Proudfoot JR, Betageri R, Kirrane T, Patel U, Sharma R, Hoermann MA, Kabcenell A, Lombaert SD, Bioorg Med Chem Lett. 2010 Nov 15;20(22):6379-83. Epub 2010 Sep 19. PMID:20934334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3otq.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3OTQ
  • CSU: Contacts of Structural Units for 3OTQ
  • Structure Factors (204 Kb)
  • Retrieve 3OTQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OTQ from S2C, [Save to disk]
  • Re-refined 3otq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OTQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OTQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OTQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3otq_A] [3otq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3OTQ
  • Community annotation for 3OTQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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