3PBL Hydrolase Hydrolase Inhibitor date Oct 20, 2010
title Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride
authors E.Y.T.Chien, W.Liu, G.W.Han, V.Katritch, Q.Zhao, V.Cherezov, R.C.S Accelerated Technologies Center For Gene To 3d Structure (A Gpcr Network (Gpcr)
compound source
Molecule: D(3) Dopamine Receptor, Lysozyme Chimera
Chain: A, B
Synonym: Dopamine D3 Receptor, Endolysin, Lysis Protein, Mu
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human, Bacteriophage T4
Organism_taxid: 9606, 10665
Gene: Drd3, E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.828 92.492 176.116 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand ETQ, GLC enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist., Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC, Science. 2010 Nov 19;330(6007):1091-5. PMID:21097933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (3pbl.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (3pbl.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 3PBL
  • CSU: Contacts of Structural Units for 3PBL
  • Structure Factors (556 Kb)
  • Retrieve 3PBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PBL from S2C, [Save to disk]
  • Re-refined 3pbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pbl] [3pbl_B] [3pbl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PBL
  • Community annotation for 3PBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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