3PDY		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, PEG	enzyme
note	3PDY is a representative structure
Gene Ontology	Chain Function Process Component B, A
Primary reference	The Structure of the Plakin Domain of Plectin Reveals a Non-canonical SH3 Domain Interacting with Its Fourth Spectrin Repeat., Ortega E, Buey RM, Sonnenberg A, de Pereda JM, J Biol Chem. 2011 Apr 8;286(14):12429-38. Epub 2011 Feb 1. PMID:21288893

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (3pdy.pdb1.gz) 69 Kb Biological Unit Coordinates (3pdy.pdb2.gz) 69 Kb Biological Unit Coordinates (3pdy.pdb3.gz) 138 Kb LPC: Ligand-Protein Contacts for 3PDY CSU: Contacts of Structural Units for 3PDY Structure Factors (306 Kb) Retrieve 3PDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PDY from S2C, [Save to disk] Re-refined 3pdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pdy] [3pdy_A] [3pdy_B] SWISS-PROT database: Domain found in 3PDY: [SPEC ] by SMART

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