3Q60 Transferase date Dec 30, 2010
title Crystal Structure Of Virulent Allele Rop5b Pseudokinase Doma To Atp
authors M.L.Reese, J.C.Boothroyd
compound source
Molecule: Rop5b
Chain: A
Fragment: Pseudokinase Domain
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Strain: Rh
Gene: Rop5b;Tggt1_042710
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 2
R_factor 0.179 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.358 69.329 43.385 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand ATP, MG, MLI enzyme Transferase E.C.2.7.11.1 BRENDA
Gene ROP5BTGGT1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA conserved non-canonical motif in the pseudoactive site of the ROP5 pseudokinase domain mediates its effect on Toxoplasma virulence., Reese ML, Boothroyd JC, J Biol Chem. 2011 Aug 19;286(33):29366-75. Epub 2011 Jun 27. PMID:21708941
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3q60.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3Q60
  • CSU: Contacts of Structural Units for 3Q60
  • Structure Factors (300 Kb)
  • Retrieve 3Q60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q60 from S2C, [Save to disk]
  • Re-refined 3q60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q60, from MSDmotif at EBI
  • Fold representative 3q60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q60_A] [3q60]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q60: [STYKc ] by SMART
  • Other resources with information on 3Q60
  • Community annotation for 3Q60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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