3RAR Hydrolase date Mar 28, 2011
title X-Ray Structure Of A Bound Phosphonate Transition State Anal Enantioselectivity Of Candida Rugosa Lipase Toward Chiral C Acids
authors P.Grochulski, R.Kazlauskas
compound source
Molecule: Lipase 1
Chain: A
Fragment: Unp Residues 16-549
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Candida Rugosa
Organism_common: Yeast
Organism_taxid: 5481
Gene: Lip1
Expression_system: Candida Rugosa
Expression_system_common: Yeast
Expression_system_taxid: 5481
symmetry Space Group: C 2 2 21
R_factor 0.171 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.000 97.500 176.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand CA, IAN, NAG enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3rar.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3rar.pdb2.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 3RAR
  • CSU: Contacts of Structural Units for 3RAR
  • Structure Factors (168 Kb)
  • Retrieve 3RAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RAR from S2C, [Save to disk]
  • Re-refined 3rar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RAR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RAR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rar_A] [3rar]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RAR
  • Community annotation for 3RAR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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