OCA Atlas for 3RJ1

3RJ1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, SE

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, I, P
D, R, K
E, S, L
F, M, T
H, O, A
J, C, Q
N, G, U

Primary reference

Architecture of the Mediator head module., Imasaki T, Calero G, Cai G, Tsai KL, Yamada K, Cardelli F, Erdjument-Bromage H, Tempst P, Berger I, Kornberg GL, Asturias FJ, Kornberg RD, Takagi Y, Nature. 2011 Jul 3;475(7355):240-3. doi: 10.1038/nature10162. PMID:21725323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk]

Biological Unit Coordinates (3rj1.pdb1.gz) 254 Kb

Biological Unit Coordinates (3rj1.pdb2.gz) 253 Kb

Biological Unit Coordinates (3rj1.pdb3.gz) 254 Kb

LPC: Ligand-Protein Contacts for 3RJ1

CSU: Contacts of Structural Units for 3RJ1

Structure Factors (1723 Kb)

Retrieve 3RJ1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RJ1 from S2C, [Save to disk]

Re-refined 3rj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RJ1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rj1] [3rj1_A] [3rj1_B] [3rj1_C] [3rj1_D] [3rj1_E] [3rj1_F] [3rj1_G] [3rj1_H] [3rj1_I] [3rj1_J] [3rj1_K] [3rj1_L] [3rj1_M] [3rj1_N] [3rj1_O] [3rj1_P] [3rj1_Q] [3rj1_R] [3rj1_S] [3rj1_T] [3rj1_U]

SWISS-PROT database:

Domain found in 3RJ1: [BAG ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]