3S8Y Hydrolase date May 31, 2011
title Bromide Soaked Structure Of An Esterase From The Oil-Degradi Bacterium Oleispira Antarctica
authors P.Petit, A.Dong, O.Kagan, A.Savchenko, A.F.Yakunin
compound source
Molecule: Esterase Apc40077
Chain: A
Ec: 3.1.1.2
Engineered: Yes
 Organism_scientific: Oleispira Antarctica
Organism_taxid: 188908
Gene: Olei01171
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv Lic
symmetry Space Group: P 2 21 21
R_factor 0.154 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.532 84.451 88.051 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BR enzyme Hydrolase E.C.3.1.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica., Lemak S, Tchigvintsev A, Petit P, Flick R, Singer AU, Brown G, Evdokimova E, Egorova O, Gonzalez CF, Chernikova TN, Yakimov MM, Kube M, Reinhardt R, Golyshin PN, Savchenko A, Yakunin AF, Biochem J. 2012 Jul 15;445(2):193-203. PMID:22519667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3s8y.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3S8Y
  • CSU: Contacts of Structural Units for 3S8Y
  • Structure Factors (342 Kb)
  • Retrieve 3S8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S8Y from S2C, [Save to disk]
  • Re-refined 3s8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3S8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3S8Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S8Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s8y_A] [3s8y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3S8Y
  • Community annotation for 3S8Y at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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