3S9C	Hydrolase	date	Jun 01, 2011
title	Russell'S Viper Venom Serine Proteinase, Rvv-V In Complex Wi Fragment (Residues 1533-1546) Of Human Factor V
authors	D.Nakayama, Y.Ben Ammar, S.Takeda
compound		source
Molecule: Vipera Russelli Proteinase Rvv-V Gamma Chain: A Synonym: Factor V-Activating Proteinase Gamma, Snake Venom Activator Gamma; Ec: 3.4.21.95		Organism_scientific: Daboia Russellii Siamensis Organism_common: Siamese Russell'S Viper Organism_taxid: 343250 Tissue: Venom
Molecule: Coagulation Factor V Chain: B Fragment: Unp Residues 1561-1574 Synonym: Activated Protein C Cofactor, Proaccelerin, Labile Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide
symmetry	Space Group: P 61	R_factor 0.183 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.200 101.200 44.200 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ACT, BGC, BMA, GLC, NAG, ZN	enzyme	Hydrolase E.C.3.4.21.95 BRENDA
note	3S9C is a representative structure
Gene Ontology	Chain Function Process Component A toxin activity
Primary reference	Structural basis of coagulation factor V recognition for cleavage by RVV-V., Nakayama D, Ben Ammar Y, Miyata T, Takeda S, FEBS Lett. 2011 Aug 23. PMID:21871889

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (3s9c.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 3S9C CSU: Contacts of Structural Units for 3S9C Structure Factors (189 Kb) Retrieve 3S9C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3S9C from S2C, [Save to disk] Re-refined 3s9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3S9C in 3D

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Visual 3D analysis of 3S9C

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3S9C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3s9c] [3s9c_A] [3s9c_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3S9C: [Tryp_SPc ] by SMART

Other resources with information on 3S9C

Community annotation for 3S9C at PDBWiki (http://pdbwiki.org)

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