3SVL Oxidoreductase date Jul 12, 2011
title Structural Basis Of The Improvement Of Chrr - A Multi-Purpos
authors S.Poulain, S.Eswaramoorthy, R.Hienerwadel, N.Bremond, M.D.Sylves Y.B.Zhang, D.Van Der Lelie, C.Berthomieu, A.C.Matin
compound source
Molecule: Protein Yief
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Yief, B3713, Jw3691
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb3
symmetry Space Group: P 63 2 2
R_factor 0.237 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.255 107.255 128.251 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, FMN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of ChrR-A Quinone Reductase with the Capacity to Reduce Chromate., Eswaramoorthy S, Poulain S, Hienerwadel R, Bremond N, Sylvester MD, Zhang YB, Berthomieu C, Van Der Lelie D, Matin A, PLoS One. 2012;7(4):e36017. Epub 2012 Apr 27. PMID:22558308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3svl.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3svl.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3SVL
  • CSU: Contacts of Structural Units for 3SVL
  • Structure Factors (157 Kb)
  • Retrieve 3SVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SVL from S2C, [Save to disk]
  • Re-refined 3svl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SVL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3svl_B] [3svl] [3svl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3SVL
  • Community annotation for 3SVL at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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