3T6C Lyase date Jul 28, 2011
title Crystal Structure Of An Enolase From Pantoea Ananatis (Efi T 501676) With Bound D-Gluconate And Mg
authors M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, B.Hill E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function I (Efi)
compound source
Molecule: Putative Mand Family Dehydratase
Chain: A, B
Synonym: Rspa
Ec: 4.2.1.-
Engineered: Yes
Organism_scientific: Pantoea Ananatis
Organism_taxid: 706191
Strain: Lmg 20103
Gene: Rspa, Pana_0592
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 4 21 2
R_factor 0.139 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.790 130.790 104.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, EDO, GCO, MG, UNX enzyme Lyase E.C.4.2.1 BRENDA
Gene PANA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (3t6c.pdb1.gz) 1087 Kb
  • LPC: Ligand-Protein Contacts for 3T6C
  • CSU: Contacts of Structural Units for 3T6C
  • Structure Factors (1011 Kb)
  • Retrieve 3T6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T6C from S2C, [Save to disk]
  • Re-refined 3t6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T6C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T6C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t6c_A] [3t6c] [3t6c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3T6C: [MR_MLE ] by SMART
  • Other resources with information on 3T6C
  • Community annotation for 3T6C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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