3TVM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 07P, CL, FUC, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, B


Primary referenceGlycolipids that Elicit IFN-gamma-Biased Responses from Natural Killer T Cells., Tyznik AJ, Farber E, Girardi E, Birkholz A, Li Y, Chitale S, So R, Arora P, Khurana A, Wang J, Porcelli SA, Zajonc DM, Kronenberg M, Howell AR, Chem Biol. 2011 Dec 23;18(12):1620-30. PMID:22195564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (517 Kb) [Save to disk]
  • Biological Unit Coordinates (3tvm.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (3tvm.pdb2.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 3TVM
  • CSU: Contacts of Structural Units for 3TVM
  • Structure Factors (918 Kb)
  • Retrieve 3TVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TVM from S2C, [Save to disk]
  • Re-refined 3tvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tvm] [3tvm_A] [3tvm_B] [3tvm_C] [3tvm_D] [3tvm_E] [3tvm_F] [3tvm_G] [3tvm_H]
  • SWISS-PROT database:
  • Domains found in 3TVM: [IG] [IG_like] [IGc1] [IGv ] by SMART

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