3UAG Ligase date Feb 24, 1999
title Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase
authors J.A.Bertrand, G.Auger, L.Martin, E.Fanchon, D.Blanot, D.Le Beller Heijenoort, O.Dideberg
compound source
Molecule: Protein (Udp-N-Acetylmuramoyl-L-Alanine:D-Glutama Ligase);
Chain: A
Ec: 6.3.2.9
Engineered: Yes
Other_details: Uma, Adp & Manganese Bound, Ph 7.2
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Jm83 (Pmld58)
Gene: Murd Gene
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm83 (Pmld58)
symmetry Space Group: P 41
R_factor 0.178 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.240 65.240 134.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand ADP, EPE, KCX, MN, UMA enzyme Ligase E.C.6.3.2.9 BRENDA
related structures by homologous chain: 1EEH, 2UAG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDetermination of the MurD mechanism through crystallographic analysis of enzyme complexes., Bertrand JA, Auger G, Martin L, Fanchon E, Blanot D, Le Beller D, van Heijenoort J, Dideberg O, J Mol Biol 1999 Jun 11;289(3):579-90. PMID:10356330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3uag.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3UAG
  • CSU: Contacts of Structural Units for 3UAG
  • Likely Quarternary Molecular Structure file(s) for 3UAG
  • Structure Factors (380 Kb)
  • Retrieve 3UAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UAG from S2C, [Save to disk]
  • Re-refined 3uag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UAG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UAG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3uaga1, region A:1-93 [Jmol] [rasmolscript] [script source]
        - Domain d3uaga2, region A:298-437 [Jmol] [rasmolscript] [script source]
        - Domain d3uaga3, region A:94-297 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uag] [3uag_A]
  • SWISS-PROT database: [P14900]
  • Domain organization of [MURD_ECOLI] by SWISSPFAM
  • Other resources with information on 3UAG
  • Community annotation for 3UAG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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