3UKH Isomerase date Nov 09, 2011
title Crystal Structure Of Udp-Galactopyranose Mutase From Aspergi Fumigatus In Complex With Udpgalp (Non-Reduced)
authors K.E.Van Straaten, D.A.R.Sanders
compound source
Molecule: Udp-Galactopyranose Mutase
Chain: A, B, C, D, E, F, G, H
Fragment: Udpgalactopyranose Mutase
Ec: 5.4.99.9
Engineered: Yes
Organism_scientific: Aspergillus Fumigatus
Organism_taxid: 746128
Strain: Cbs 144-89
Gene: Glf, Glfa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1
R_factor 0.222 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.967 129.262 173.885 89.87 84.64 81.21
method X-Ray Diffractionresolution 2.30 Å
ligand CL, FAD, FDA, GDU enzyme Isomerase E.C.5.4.99.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural insight into the unique substrate binding mechanism and flavin redox state of UDP-galactopyranose mutase from Aspergillus fumigatus., van Straaten KE, Routier FH, Sanders DA, J Biol Chem. 2012 Feb 10. PMID:22334662
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (706 Kb) [Save to disk]
  • Biological Unit Coordinates (3ukh.pdb1.gz) 355 Kb
  • Biological Unit Coordinates (3ukh.pdb2.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 3UKH
  • CSU: Contacts of Structural Units for 3UKH
  • Structure Factors (4048 Kb)
  • Retrieve 3UKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UKH from S2C, [Save to disk]
  • Re-refined 3ukh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UKH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UKH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ukh_A] [3ukh_C] [3ukh_E] [3ukh] [3ukh_D] [3ukh_B] [3ukh_F] [3ukh_G] [3ukh_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UKH
  • Community annotation for 3UKH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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