3UL8	Immune System	date	Nov 10, 2011
title	Crystal Structure Of The Tv3 Mutant V134l
authors	H.J.Kim, H.K.Cheong, Y.H.Jeon
compound		source
Molecule: Toll-Like Receptor 4, Variable Lymphocyte Recepto Chain: A Fragment: Unp Residues 27-228, Unp Residues 126-199 Synonym: Htoll Engineered: Yes Mutation: Yes Other_details: The Fusion Protein Of Tlr4 (Unp Residues 27- Vlrb (Unp Residues 126-199)		Organism_scientific: Homo Sapiens, Eptatretus Burgeri Organism_common: Human, Inshore Hagfish Organism_taxid: 9606, 7764 Gene: Tlr4, Vlrb Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.240 R_Free 0.300
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.040 50.500 192.780 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BMA, FUL, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based rational design of a Toll-like receptor 4 (TLR4) decoy receptor with high binding affinity for a target protein., Han J, Kim HJ, Lee SC, Hong S, Park K, Jeon YH, Kim D, Cheong HK, Kim HS, PLoS One. 2012;7(2):e30929. Epub 2012 Feb 17. PMID:22363519

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (3ul8.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3UL8 CSU: Contacts of Structural Units for 3UL8 Structure Factors (80 Kb) Retrieve 3UL8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UL8 from S2C, [Save to disk] Re-refined 3ul8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3UL8

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UL8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ul8] [3ul8_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3UL8: [LRR] [LRRCT] [LRR_TYP ] by SMART

Other resources with information on 3UL8

Community annotation for 3UL8 at PDBWiki (http://pdbwiki.org)

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