3UVF	Hydrolase Dna	date	Nov 29, 2011
title	Expanding Lagalidadg Endonuclease Scaffold Diversity By Rapi Surveying Evolutionary Sequence Space
authors	K.Jacoby, M.Metzger, B.Shen, J.Jarjour, B.Stoddard, A.Scharenberg
compound		source
Molecule: Intron-Encoded Dna Endonuclease I-Hjemi Chain: A, B Fragment: I-Hjemi Synonym: Cob Intron Protein, Mrna Maturase Bi1, Truncated N Functional Cytochrome B, Dna Endonucleaserna Maturase I-An Ec: 3.1.-.- Engineered: Yes Mutation: Yes		Organism_scientific: Trichoderma Reesei Organism_taxid: 51453 Gene: I-Anii Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Ril+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b(+)
Molecule: Synthetic Oligo Chain: C, E Engineered: Yes		Synthetic: Yes Other_details: Synthetic Oligo
Molecule: Synthetic Oligo Chain: D, F Engineered: Yes		Synthetic: Yes Other_details: Synthetic Oligo
symmetry	Space Group: P 21 21 2	R_factor 0.280 R_Free 0.378
crystal cell	length a length b length c angle alpha angle beta angle gamma 181.591 73.592 82.031 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CA, NA, PEG, SO4	enzyme	Hydrolase E.C.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space., Jacoby K, Metzger M, Shen BW, Certo MT, Jarjour J, Stoddard BL, Scharenberg AM, Nucleic Acids Res. 2012 Feb 14. PMID:22334611

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (3uvf.pdb1.gz) 136 Kb Biological Unit Coordinates (3uvf.pdb2.gz) 137 Kb LPC: Ligand-Protein Contacts for 3UVF CSU: Contacts of Structural Units for 3UVF Structure Factors (170 Kb) Retrieve 3UVF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UVF from S2C, [Save to disk] Re-refined 3uvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UVF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UVF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UVF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uvf] [3uvf_E] [3uvf_D] [3uvf_A] [3uvf_C] [3uvf_B] [3uvf_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3UVF

Community annotation for 3UVF at PDBWiki (http://pdbwiki.org)

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