3UVT	Isomerase	date	Nov 30, 2011
title	Crystal Structure Of The Third Catalytic Domain Of Erp46
authors	G.Kozlov, I.E.Gulerez, K.Gehring
compound		source
Molecule: Thioredoxin Domain-Containing Protein 5 Chain: A, B, C, D, E Fragment: Catalytic Domain 3 Synonym: Endoplasmic Reticulum Resident Protein 46, Er Prot Erp46, Thioredoxin-Like Protein P46; Ec: 5.3.4.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Txndc5, Tlp46, Unq364pro700 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.106 61.886 71.002 90.00 106.37 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	SO4	enzyme	Isomerase E.C.5.3.4.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, E, B
Primary reference	Structure of the third catalytic domain of the protein disulfide isomerase ERp46., Gulerez IE, Kozlov G, Rosenauer A, Gehring K, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):378-81., Epub 2012 Mar 27. PMID:22505402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (3uvt.pdb1.gz) 37 Kb Biological Unit Coordinates (3uvt.pdb2.gz) 36 Kb Biological Unit Coordinates (3uvt.pdb3.gz) 37 Kb Biological Unit Coordinates (3uvt.pdb4.gz) 38 Kb Biological Unit Coordinates (3uvt.pdb5.gz) 32 Kb LPC: Ligand-Protein Contacts for 3UVT CSU: Contacts of Structural Units for 3UVT Structure Factors (562 Kb) Retrieve 3UVT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UVT from S2C, [Save to disk] Re-refined 3uvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UVT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UVT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UVT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uvt_A] [3uvt] [3uvt_D] [3uvt_C] [3uvt_B] [3uvt_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3UVT

Community annotation for 3UVT at PDBWiki (http://pdbwiki.org)

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