OCA Atlas for 3V6M

3V6M

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
D, G, J, A, F, C, B, I

Primary reference

Inhibitory mechanism of caspase-6 phosphorylation revealed by crystal structures, molecular dynamics simulations, and biochemical assays., Cao Q, Wang XJ, Liu CW, Liu DF, Li LF, Gao YQ, Su XD, J Biol Chem. 2012 May 4;287(19):15371-9. Epub 2012 Mar 20. PMID:22433863

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (528 Kb) [Save to disk]

Biological Unit Coordinates (3v6m.pdb1.gz) 130 Kb

Biological Unit Coordinates (3v6m.pdb2.gz) 131 Kb

Biological Unit Coordinates (3v6m.pdb3.gz) 132 Kb

Biological Unit Coordinates (3v6m.pdb4.gz) 135 Kb

CSU: Contacts of Structural Units for 3V6M

Structure Factors (1332 Kb)

Retrieve 3V6M in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3V6M from S2C, [Save to disk]

Re-refined 3v6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V6M in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v6m] [3v6m_A] [3v6m_B] [3v6m_C] [3v6m_D] [3v6m_F] [3v6m_G] [3v6m_I] [3v6m_J]

SWISS-PROT database:

Domain found in 3V6M: [CASc ] by SMART

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