3VF1 Oxidoreductase date Jan 09, 2012
title Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A For Ca-Regulation
authors P.Eek, R.Jarving, I.Jarving, N.C.Gilbert, M.E.Newcomer, N.Samel
compound source
Molecule: 11r-Lipoxygenase
Chain: A, B
Engineered: Yes
Organism_scientific: Gersemia Fruticosa
Organism_taxid: 134440
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.800 148.710 117.330 90.00 119.16 90.00
method X-Ray Diffractionresolution 2.47 Å
ligand FE2, FRU, GLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a calcium-dependent 11R-lipoxygenase suggests a mechanism for Ca2+-regulation., Eek P, Jarving R, Jarving I, Gilbert NC, Newcomer ME, Samel N, J Biol Chem. 2012 May 9. PMID:22573333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]
  • Biological Unit Coordinates (3vf1.pdb1.gz) 212 Kb
  • Biological Unit Coordinates (3vf1.pdb2.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 3VF1
  • CSU: Contacts of Structural Units for 3VF1
  • Structure Factors (373 Kb)
  • Retrieve 3VF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VF1 from S2C, [Save to disk]
  • Re-refined 3vf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VF1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VF1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q3vf1, region F:20-129 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vf1_B] [3vf1] [3vf1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VF1: [LH2 ] by SMART
  • Other resources with information on 3VF1
  • Community annotation for 3VF1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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