3VIB Dna Binding Protein date Sep 27, 2011
title Structural Basis For Multidrug Recognition And Antimicrobial Resistance By Mtrr, An Efflux Pump Regulator From Neisseria Gonorrhoeae
authors M.Kumaraswami, W.M.Shafer, R.G.Brennan
compound source
Molecule: Mtrr
Chain: A, B, C, D
Synonym: Hth-Type Transcriptional Regulator Mtrr, Multiple Transferable Resistance Repressor;
Engineered: Yes
 Organism_scientific: Neisseria Gonorrhoeae
Organism_taxid: 485
Gene: Mtrr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
218.300 84.600 58.100 90.00 103.90 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CXS, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3vib.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3vib.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3VIB
  • CSU: Contacts of Structural Units for 3VIB
  • Structure Factors (548 Kb)
  • Retrieve 3VIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VIB from S2C, [Save to disk]
  • Re-refined 3vib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VIB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VIB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vib_C] [3vib_B] [3vib_A] [3vib_D] [3vib]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VIB
  • Community annotation for 3VIB at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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