3VND date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PE8, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, G, H, B, E, C


Primary referenceStrategy for cold adaptation of the tryptophan synthase alpha subunit from the psychrophile Shewanella frigidimarina K14-2: crystal structure and physicochemical properties., Mitsuya D, Tanaka S, Matsumura H, Urano N, Takano K, Ogasahara K, Takehira M, Yutani K, Ishida M, J Biochem. 2014 Feb;155(2):73-82. doi: 10.1093/jb/mvt098. Epub 2013 Oct 25. PMID:24163283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • Biological Unit Coordinates (3vnd.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3vnd.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb4.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb5.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb6.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb7.gz) 46 Kb
  • Biological Unit Coordinates (3vnd.pdb8.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3VND
  • CSU: Contacts of Structural Units for 3VND
  • Structure Factors (2112 Kb)
  • Retrieve 3VND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VND from S2C, [Save to disk]
  • Re-refined 3vnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vnd] [3vnd_A] [3vnd_B] [3vnd_C] [3vnd_D] [3vnd_E] [3vnd_F] [3vnd_G] [3vnd_H]
  • SWISS-PROT database:

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