3WAJ Transferase date May 03, 2013
title Crystal Structure Of The Archaeoglobus Fulgidus Oligosaccharyltransferase (O29867_arcfu) Complex With Zn An
authors S.Matsumoto, A.Shimada, D.Kohda
compound source
Molecule: Transmembrane Oligosaccharyl Transferase
Chain: A
Synonym: Afaglb-L
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 224325
Strain: Dsm 4304
Gene: Aglb-L
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet52b(+)
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
234.195 108.961 56.069 90.00 96.08 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4, ZN enzyme Transferase E.C. BRENDA

Primary referenceCrystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation., Matsumoto S, Shimada A, Nyirenda J, Igura M, Kawano Y, Kohda D, Proc Natl Acad Sci U S A. 2013 Oct 14. PMID:24127570
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (3waj.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 3WAJ
  • CSU: Contacts of Structural Units for 3WAJ
  • Structure Factors (1065 Kb)
  • Retrieve 3WAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WAJ from S2C, [Save to disk]
  • Re-refined 3waj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WAJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WAJ, from MSDmotif at EBI
  • Fold representative 3waj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3waj_A] [3waj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WAJ
  • Community annotation for 3WAJ at PDBWiki (http://pdbwiki.org)

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