3WOF	Transferase Transcription	date	Dec 26, 2013
title	Crystal Structure Of P23-45 Gp39 (6-132) Bound To Thermus Th Rna Polymerase Beta-Flap Domain
authors	S.Tagami, S.Sekine, L.Minakhin, D.Esyunina, R.Akasaka, M.Shirouzu A.Kulbachinskiy, K.Severinov, S.Yokoyama
compound		source
Molecule: Dna-Directed Rna Polymerase Subunit Beta Chain: A, C, E, G, I, K, M, O, Q, S, U, W Fragment: Beta-Flap Domain, Unp Residues 703-830 Synonym: Rnap Subunit Beta, Rna Polymerase Subunit Beta, Transcriptase Subunit Beta; Ec: 2.7.7.6 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Rpob, Ttha1813 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
Molecule: Putative Uncharacterized Protein Chain: B, D, F, H, J, L, N, P, R, T, V, X Fragment: Unp Residues 6-132 Synonym: Gp39 Engineered: Yes		Organism_scientific: Thermus Phage P23-45 Organism_taxid: 466051 Strain: Thermus Phage P23-45 Gene: Gp39 (P23p39), P23p39 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-47b
symmetry	Space Group: P 41 21 2	R_factor 0.219 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 213.777 213.777 234.598 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Transferase E.C.2.7.7.6 BRENDA
Gene Ontology	Chain Function Process Component S, A, O, W, K, E, Q, M, C, I, G, U
Primary reference	Structural basis for promoter specificity switching of RNA polymerase by a phage factor., Tagami S, Sekine S, Minakhin L, Esyunina D, Akasaka R, Shirouzu M, Kulbachinskiy A, Severinov K, Yokoyama S, Genes Dev. 2014 Mar 1;28(5):521-31. doi: 10.1101/gad.233916.113. PMID:24589779

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (939 Kb) [Save to disk] Biological Unit Coordinates (3wof.pdb1.gz) 82 Kb Biological Unit Coordinates (3wof.pdb2.gz) 84 Kb Biological Unit Coordinates (3wof.pdb3.gz) 83 Kb Biological Unit Coordinates (3wof.pdb4.gz) 83 Kb Biological Unit Coordinates (3wof.pdb5.gz) 83 Kb Biological Unit Coordinates (3wof.pdb6.gz) 83 Kb Biological Unit Coordinates (3wof.pdb7.gz) 82 Kb Biological Unit Coordinates (3wof.pdb8.gz) 83 Kb Biological Unit Coordinates (3wof.pdb9.gz) 83 Kb CSU: Contacts of Structural Units for 3WOF Structure Factors (1472 Kb) Retrieve 3WOF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WOF from S2C, [Save to disk] Re-refined 3wof structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WOF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WOF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WOF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wof_J] [3wof_W] [3wof_C] [3wof_A] [3wof_U] [3wof_K] [3wof_F] [3wof_P] [3wof_G] [3wof_S] [3wof_H] [3wof_I] [3wof_N] [3wof_V] [3wof_M] [3wof_O] [3wof_X] [3wof_L] [3wof_E] [3wof] [3wof_D] [3wof_B] [3wof_Q] [3wof_T] [3wof_R] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WOF

Community annotation for 3WOF at PDBWiki (http://pdbwiki.org)

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