3ZG6	Hydrolase Inhibitor	date	Dec 15, 2012
title	The Novel De-Long Chain Fatty Acid Function Of Human Sirt6
authors	Y.Wang, Q.Hao
compound		source
Molecule: Nad-Dependent Protein Deacetylase Sirtuin-6 Chain: A Fragment: Catalytic Domain, Residues 1-296 Synonym: Regulatory Protein Sir2 Homolog 6, Sir2-Like Prote Sirt6; Ec: 3.5.1.-, 2.4.2.31 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a
Molecule: Peptide Chain: F Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: H 3 2	R_factor 0.19112 R_Free 0.23581
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.891 104.891 231.492 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	APR, GOL, MYK, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	SIRT6 regulates TNF-alpha secretion through hydrolysis of long-chain fatty acyl lysine., Jiang H, Khan S, Wang Y, Charron G, He B, Sebastian C, Du J, Kim R, Ge E, Mostoslavsky R, Hang HC, Hao Q, Lin H, Nature. 2013 Apr 4;496(7443):110-3. doi: 10.1038/nature12038. PMID:23552949

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (3zg6.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 3ZG6 CSU: Contacts of Structural Units for 3ZG6 Structure Factors (370 Kb) Retrieve 3ZG6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZG6 from S2C, [Save to disk] Re-refined 3zg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZG6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZG6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZG6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zg6_A] [3zg6] [3zg6_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 3ZG6 at PDBWiki (http://pdbwiki.org)

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