487D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FMT, MSE, NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


I


J


K


L


M


N


Primary referenceThe 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution., Mueller F, Sommer I, Baranov P, Matadeen R, Stoldt M, Wohnert J, Gorlach M, van Heel M, Brimacombe R, J Mol Biol 2000 Apr 21;298(1):35-59. PMID:10756104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (487d.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 487D
  • CSU: Contacts of Structural Units for 487D
  • Likely Quarternary Molecular Structure file(s) for 487D
  • Retrieve 487D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 487D from S2C, [Save to disk]
    • View 487D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [487d] [487d_H] [487d_I] [487d_J] [487d_K] [487d_L] [487d_M] [487d_N]
  • SWISS-PROT database: [P0A7J7] [P0A7L0] [P68919] [P60422] [P0A7R1]
  • Domains found in 487D: [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science