4B0N Transferase date Jul 03, 2012
title Crystal Structure Of Pks-I From The Brown Algae Ectocarpus S
authors C.Leroux, L.Meslet-Cladiere, L.Delage, S.Goulitquer, C.Leblanc, E V.Stiger-Pouvreau, P.Potin, M.Czjzek
compound source
Molecule: Polyketide Synthase III
Chain: A, B
Synonym: Type III Polyketide Synthase
Ec: 2.3.1.-
Engineered: Yes
Other_details: Covalent Link Between C 194 And The Acetyl G The Fatty Acid Ligand
Organism_scientific: Ectocarpus Siliculosus
Organism_common: Brown Algae
Organism_taxid: 2880
Strain: Ec32
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Codonplus-Rilp
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe-80l
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.320 83.395 152.729 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand ACD, MLA enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure/Function Analysis of a Type III Polyketide Synthase in the Brown Alga Ectocarpus siliculosus Reveals a Biochemical Pathway in Phlorotannin Monomer Biosynthesis., Meslet-Cladiere L, Delage L, J-J Leroux C, Goulitquer S, Leblanc C, Creis E, Gall EA, Stiger-Pouvreau V, Czjzek M, Potin P, Plant Cell. 2013 Aug 27. PMID:23983220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (4b0n.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 4B0N
  • CSU: Contacts of Structural Units for 4B0N
  • Structure Factors (277 Kb)
  • Retrieve 4B0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B0N from S2C, [Save to disk]
  • Re-refined 4b0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B0N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b0n_B] [4b0n_A] [4b0n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B0N
  • Community annotation for 4B0N at PDBWiki (http://pdbwiki.org)

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