OCA Atlas for 4B8C

4B8C

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, H, G, I
C, E, A, F

Primary reference

Architecture of the nuclease module of the yeast ccr4-not complex: the not1-caf1-ccr4 interaction., Basquin J, Roudko VV, Rode M, Basquin C, Seraphin B, Conti E, Mol Cell. 2012 Oct 26;48(2):207-18. doi: 10.1016/j.molcel.2012.08.014. Epub 2012 , Sep 6. PMID:22959269

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (500 Kb) [Save to disk]

Biological Unit Coordinates (4b8c.pdb1.gz) 246 Kb

Biological Unit Coordinates (4b8c.pdb2.gz) 246 Kb

CSU: Contacts of Structural Units for 4B8C

Structure Factors (2848 Kb)

Retrieve 4B8C in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4B8C from S2C, [Save to disk]

Re-refined 4b8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4B8C in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4b8c] [4b8c_A] [4b8c_B] [4b8c_C] [4b8c_D] [4b8c_E] [4b8c_F] [4b8c_G] [4b8c_H] [4b8c_I] [4b8c_J] [4b8c_K] [4b8c_L]

SWISS-PROT database:

Domains found in 4B8C: [LRR] [LRR_TYP ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]