OCA Atlas for 4BJ8

4BJ8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BTN, GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, L, J, H, E, P, K, N, F, C, M, O, I, D, B, G

Primary reference

Zebavidin - an avidin-like protein from zebrafish., Taskinen B, Zmurko J, Ojanen M, Kukkurainen S, Parthiban M, Maatta JA, Leppiniemi J, Janis J, Parikka M, Turpeinen H, Ramet M, Pesu M, Johnson MS, Kulomaa MS, Airenne TT, Hytonen VP, PLoS One. 2013 Oct 24;8(10):e77207. doi: 10.1371/journal.pone.0077207. PMID:24204770

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]

Biological Unit Coordinates (4bj8.pdb1.gz) 79 Kb

Biological Unit Coordinates (4bj8.pdb2.gz) 80 Kb

Biological Unit Coordinates (4bj8.pdb3.gz) 80 Kb

Biological Unit Coordinates (4bj8.pdb4.gz) 80 Kb

LPC: Ligand-Protein Contacts for 4BJ8

CSU: Contacts of Structural Units for 4BJ8

Structure Factors (1119 Kb)

Retrieve 4BJ8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4BJ8 from S2C, [Save to disk]

Re-refined 4bj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BJ8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bj8] [4bj8_A] [4bj8_B] [4bj8_C] [4bj8_D] [4bj8_E] [4bj8_F] [4bj8_G] [4bj8_H] [4bj8_I] [4bj8_J] [4bj8_K] [4bj8_L] [4bj8_M] [4bj8_N] [4bj8_O] [4bj8_P]

SWISS-PROT database:

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