4DJD Crystal structure of folate-free corrinoid iron-sulfur protein (CFeSP) in complex with its methyltransferase (MeTr) date 2012-02-01
authors Kung, Y., Doukov, T.I., Blasiak, L.C., Drennan, C.L.
compound source
symmetry
R_factor
R_Free 0.2287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.38
ligand B12, CA, GOL, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, E


F, D


Primary referenceVisualizing molecular juggling within a B(12)-dependent methyltransferase complex., Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, Seravalli J, Ragsdale SW, Drennan CL, Nature. 2012 Mar 14. doi: 10.1038/nature10916. PMID:22419154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]
  • Biological Unit Coordinates (4djd.pdb1.gz) 638 Kb
  • LPC: Ligand-Protein Contacts for 4DJD
  • CSU: Contacts of Structural Units for 4DJD
  • Structure Factors (1337 Kb)
  • Retrieve 4DJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJD from S2C, [Save to disk]
  • Re-refined 4djd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DJD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4djd_E] [4djd_A] [4djd_F] [4djd] [4djd_D] [4djd_C] [4djd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DJD
  • Community annotation for 4DJD at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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