4DM8	Crystal structure of RARb LBD in complex with 9cis retinoic acid	date
authors	Osz, J., livet, Y.Br., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.
compound		source
symmetry		R_factor R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	REA BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structural basis for a molecular allosteric control mechanism of cofactor binding to nuclear receptors., Osz J, Brelivet Y, Peluso-Iltis C, Cura V, Eiler S, Ruff M, Bourguet W, Rochel N, Moras D, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E588-94. Epub 2012 Feb 21. PMID:22355136

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (4dm8.pdb1.gz) 41 Kb Biological Unit Coordinates (4dm8.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 4DM8 CSU: Contacts of Structural Units for 4DM8 Structure Factors (198 Kb) Retrieve 4DM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DM8 from S2C, [Save to disk] Re-refined 4dm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DM8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DM8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DM8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dm8] [4dm8_D] [4dm8_B] [4dm8_A] [4dm8_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4DM8: [HOLI ] by SMART

Other resources with information on 4DM8

Community annotation for 4DM8 at PDBWiki (http://pdbwiki.org)

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